joshwlambert/propose
Pandemic decision support tool
Software engineer | evolutionary biologist | island biogeographer
Repositories
joshwlambert/ringbp
Simulate infectious disease transmission with contact tracing
joshwlambert/ringbpCOVID
joshwlambert/epiparameterReportingGuidance
A research compendium for Tamayo Cuartero et al. (2026) doi:10.1016/j.epidem.2026.100942
joshwlambert/BundibugyoNPI2026
joshwlambert/DAISIEprep
Extracts phylogenetic island community data from phylogenetic trees
joshwlambert/FluTracer
joshwlambert/LearnDAISIEprep
Teaching resource for DAISIE tooling ecosystem
joshwlambert/sandbox
joshwlambert/roxyjoin
joshwlambert/epiparameter-showcase
joshwlambert/epipipe
joshwlambert/lifecycling
Guide to versioning and badging R packages
joshwlambert/ExtendDataFrames
joshwlambert/simulist-showcase
joshwlambert/Epidemiology
CRAN Task View: Epidemiology
joshwlambert/DAISIEprepExtra
Data package with scripts to reproduce examples and plots from DAISIEprep application paper
joshwlambert/joshwlambert
joshwlambert/islandasr
joshwlambert/roop
joshwlambert/DAISIEmainland
Simulate phylogenetic data on islands with a evolving mainland pool
joshwlambert/DAISIEcontinental
An R package to test the continental DAISIE MLE model
joshwlambert/MadIsland
A R package with functions, scripts (R and bash) and data to reproduce Lambert et al. Madagascar paper
joshwlambert/epicontacts
Handling, Visualisation and Analysis of Epidemiological Contacts
joshwlambert/randomNames
Function to generate random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names.
joshwlambert/packageReview
Demo R package to demonstrate code review using GitHub PRs
joshwlambert/scoringutils
Utilities for Scoring and Assessing Predictions