Name: James Sacco
Type: User
Company: Laboratory for Genomics Research UCSF-Berkeley-GSK
Bio: Bioinformatics Programmer at the LGR - Laboratory for Genomics Research, San Francisco, CA, USA; Contributor to @ucsf-lgr
Location: San Francisco, CA, USA
crispresso
scripts for crispresso analysis
deeplearninglifesciences
Example code from the book "Deep Learning for the Life Sciences"
dna-sequence-analyzer
Local/global sequence alignment (Smith Waterman algorithm), edit distance/similarity (Needleman Wunsch algorithm), RNA to amino acids translation
ds-cheatsheets
List of Data Science Cheatsheets to rule the world
free-programming-books
:books: Freely available programming books
genomicdatacommons
Provide R access to the NCI Genomic Data Commons portal.
getting-started-in-r
An 8 page guide to starting with R - Tidyverse Edition
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
grep2
GEO RNA-seq Experiments Processing Pipeline
guideseq
Analysis pipeline for the GUIDE-seq assay. For news, see:
hail
Analyze 1000 Genomes VCF with Hail platform
hands-on-algorithmic-problem-solving
A middle-to-high level algorithm book designed with coding interview at heart!
iguide
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
igwos
iGWOS: integrated Genome-Wide Off-target cleavage Search
intro-to-rnaseq-hpc-o2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
jsacco1.github.io
Bioinformatics Portfolio
katacoda-scenarios
Katacoda Scenarios
kedro-viz
Visualise your Kedro data pipelines.
kubernetes-mlops
An introduction to MLOps using Python, Docker and Kubernetes.
learning-resource-links
An awesome list of learning resources for bioinformatics, genomics and computational biology
m5-r-intro
Module 5: Introduction to R
maf-summary
Summary of a single or multiple MAF files.
ml
machine learning projects
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
needleman-wunsch-algorithm
ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
oneliners
Useful bash one-liners for bioinformatics.
online-cv
A minimal Jekyll Theme to host your resume (CV)
problem_solving
data structures and algorithmic problems
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
