julias92 / evprofiler Goto Github PK

In case something is filtered out, add the reason and value to the error message.

• replicate color on barplots
• node color on networks
• edge color on networks

Still need to figure out whether to do this with static images or generate them on the fly.

These will be necessary for the neighborhood analysis and will be triggered by the analysis buttons, which also still need to be implemented.

• Figure out how to do button callbacks
• Do input validation on the fly and enable/disable button accordingly

Make the navigation bars and their hirarchy more visible.
Add a little color to the whole site.

e.g. the explanation on the mutliquery gene input box

This downloadable table should comprise the full neighborhood used for quantile and z-score calculation.

Rotate the Barplot to make the gene names more readable. Need to see what that looks like.
Would definitely be more scalable than the current version.

• environment
• useful call to panel

• check if the file chooser dialog allows setting the filetype, otherwise supply a filetype dropdown.

Probably fixable by turning around the writing of the graph layout and the quantile.

On the Networkplots add tooltips to the options for selecting the Nodes and edges to be displayed.
In case this can not be realized nicely add links to the about section.

• Need to add EV marker annotation to the PCA file as well.
• Need to add additional tabs to both query types.

• Add Profile tab to both query types
• Always show the profiles on the fly without running the analysis

Somewhere there should be a graphical illustration of what the percentile scoring actally means. This could either be another Tab in the single query or a static plot on the about page.

Ideas include:

• uniprot link for single query
• string for networks
• GO enrichment for networks

Rather than enforcing capital letters, just capitalize them on the fly.