3d-voxeldatagenerator

Python generator for voxel data augmentation

affinder

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

arboretum

Track and lineage visualization with BayesianTracker and Napari

astrocytesegmentation

bigdataviewer-workshop

biopython

Introductory Python course for biologists

blob_tracker4d

4D Blob tracker @V Kapoor

btrack

Bud tracker with mastadon and trackmate based tracking and track editing tools. @Fijisc plugin to be

cellnet

CellNet for cells

cellpose

a generalist algorithm for cellular segmentation

cellshape-cloud

cellshape-cluster

Cellshape-cluster is an easy-to-use tool to analyse the cluster cells by their shape using deep learning and, in particular, deep-embedded-clustering

cellshape-helper

Cellshape-helper provides the ability to convert 3D masks to point clouds.

chirp_fits

clij

cloudify

Tracking properties of cloud aggregates in Nuclei

cluster-guide

A guide to using clusters in general (and th-top in particular)

commonerrors

A list of errors I have encountered, their reasons and solutions

convnetjs

Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.

cortexthicknessanalysis

Segmentation and Analysis Software for Measuring Cortex Thickness

create_slurm_debian

Create a Slurm machine on Debian

csbdeep

Image restoration for fluorescence microscopy

dataanalyst_p7_forecast-revenue-classes

deep-learning-bootcamp-2018

Poster, notes, and code related to the Deep Learning Bootcamp 2018 in Dresden

deep-learning-models

Keras code and weights files for popular deep learning models.

deepbubblator

deeplearning-at-iktp2018

slidedeck for my presentation at the institute for nuclear and particle physics at TU Dresden, October 2018

deepnet

Implementation of some deep learning algorithms.

detectionaccuracychecker

Using KD tree for list of co ordinates to quantify accuracy of detections written as csv file

devriesmatt