labelme

Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

latex-template-collection

Collection of different LaTeX/XeTeX templates (cv, invoices, timesheets, letters, etc.).

learnathonusecodes

Useful collection of codes

lightsheettrain

Create training data for inr files for Neural Network training

list-of-update-sites

The update sites ImageJ knows about automatically

livelossplot

Live training loss plot in Jupyter Notebook for Keras, PyTorch and others

magicgui

build GUIs from python functions, using magic.

mastodonanalysis

Read and analyse Mastodon (FIJI Plugin) .csv and .xml data

mathforkids

Math tutorial videos for kids starting from 5

medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

memray

Memray is a memory profiler for Python

microscopeimagequality

migrate3d

A Python package for analyzing XYZ positional data of moving objects over time

model_zoo

modelcomparision

Compare different models for performance

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-annotation-project

Create projects in napari to annotate series of images and export annotations

napari-dask-example

notebook demonstrating napari with dask-delayed processing

napari-feature-classifier

napari-labfill

Napari plugin for creating labels using floodfill.

napari-manual-split-and-merge-labels

napari-metroid

This napari plugin creates several regions of interest of similar area over cells in a fluorescence video (2D+time). It then gets ROIs means over time and performs signal denoising: fixes photobleaching and separates signal from noise by means of blind source separation (with or without wavelet filtering).

napari-talk-scipy-2023

notebook and (eventually) slides from scipy 2023 talk

napari_demo

napari_zeiss

Use Napari Viewer to display CZI images

napariboard-proto

Prototype implementation of napari-integrated CNN training viewer

neubias-porto2019

Hands-on Python: Plotting and Data Analysis

neuralnetjs

A javascript based network running in your browser

nnunet

notes

Notes On Using Data Science & Artificial Intelligence To Fight For Something That Matters.