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azhag djsutherland michaelarbel wittawatj afcarl

independent-jobs's Issues

SlurmComputationEngine keeps running even when all jobs finish

I am using engine = SlurmComputationEngine(..) to submit jobs. Then at the end, I do engine.wait_for_all(). When the number of jobs is large, the program execution never passes the line engine.wait_for_all(). I can confirm that all the jobs are done. I suspect that the engine somehow thinks that some jobs are lost and resubmits them (?). Using commit 06ed160a9 on 12 May 2017.

'SlurmComputationEngine' object has no attribute 'all'

According to the log, probably some of the submitted jobs were killed by Slurm. The computation engine seems to have submitted again. But then, I am not sure why I got

AttributeError: 'SlurmComputationEngine' object has no attribute 'all'

Full log

INFO: 2015-12-09 21:56:03,634: BatchClusterComputationEngine._wait_until_n_unfinished(): Waiting for e1_8b4b6ea0-b273-47df-83ed-807
a1b783db2 and 219 other jobs
INFO: 2015-12-09 21:56:29,261: BatchClusterComputationEngine._wait_until_n_unfinished(): e1_8b4b6ea0-b273-47df-83ed-807a1b783db2 ex
ceeded maximum waiting time of 3540h
INFO: 2015-12-09 21:56:29,261: BatchClusterComputationEngine._resubmit(): Re-submitting under name e1_00dbeb1f-91d9-4ba2-b2dd-d234e
8993689
Traceback (most recent call last):
  File "freqopttest/ex/ex1_power_vs_n.py", line 199, in <module>
    main()
  File "freqopttest/ex/ex1_power_vs_n.py", line 168, in main
    engine.wait_for_all()
  File "/nfs/nhome/live/wittawat/git/independent-jobs/independent_jobs/engines/BatchClusterComputationEngine.py", line 279, in wait
_for_all
    self._wait_until_n_unfinished(0)
  File "/nfs/nhome/live/wittawat/git/independent-jobs/independent_jobs/engines/BatchClusterComputationEngine.py", line 274, in _wai
t_until_n_unfinished
    self._resubmit(job_name)
  File "/nfs/nhome/live/wittawat/git/independent-jobs/independent_jobs/engines/BatchClusterComputationEngine.py", line 223, in _res
ubmit
    for i in range(len(self.all)):
AttributeError: 'SlurmComputationEngine' object has no attribute 'all'

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