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Required static files
Hey Stepanova, awesome work on diricore. Would you help clarify the way to obtain/prepare the following static data files required by rpf_density and subseq scripts respectively. New to this area, thanks a lot.
# required by rpf density analysis
INDEXDATA_FILE="$BASE_DIR/static/${species}/transcript_data.hdf5";
MAPS_FILE="$BASE_DIR/static/${species}/codon_regions.width_61.hdf5";
MAPSSTART_FILE="$BASE_DIR/static/${species}/codon_regions.START_Other_ATG.width_61.hdf5";
# required by subseq analysis
INDEXDATAFN="$BASE_DIR/static/${species}/subseq_index_data.pkl.gz";diricore
Hi, stepanova. What's the difference between 'diricore' and 'diricore_clean'?
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