kchoover14 / ryukyuresilience

This is a respository for the project "Variation in resilience, health, and colonialism in the early modern Ryukyu Islands (17th-19th centuries) " by Mark J. Hudson, Mauricio Hernandez, Kara C. Hoover

RyukyuResilience

START HERE

A PDF summary of the project can be found here: https://rpubs.com/kchoover14/RyukyuResilience

R SCRIPTS

The scripts contain the full code used in the study (includes code not found in markdown).

script1a-data cleaning-dental.R script1b-data cleaning-cribra orbitalia.R script2-exploration.R script3-outlier removal.R script4-analysis.R

DATA

Raw data collected by MJH in Excel format with a tab for each site.

data-ryukyu-raw-cribra orbitalia-MJH.xlsx data-ryukyu-raw-dental-MJH.xlsx

CSV files of Excel tabs from raw data collected by MJH (conversion to UTF to eliminate character coding issues from Japanese to English)

data-ryukyu-raw-cribra orbitalia-kanna.csv data-ryukyu-raw-cribra orbitalia-nagabaka.csv data-ryukyu-raw-cribra orbitalia-yatchi.csv data-ryukyu-raw-dental-kanna.csv data-ryukyu-raw-dental-nagabaka.csv data-ryukyu-raw-dental-yatchi.csv

Data after cleaning and simplified to variables of interest for analysis

data-ryukyu-clean-dental.csv (a clean dataset containing all variables) data-ryukyu-final-cribra orbitalia.csv (a simplified dataset containing only variables used for model building) data-ryukyu-final-dental.csv (a simplified dataset containing only variables used for model building) data-ryukyu-final-dental out.csv (a simplified dataset containing only variables used for model building and duplicates of hypo and calc but without outliers)