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Kat the Bioinformagician

I am a bioinformatian and computational biologist analyst at the Ohio State University Microbiology Department.

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My focus at the moment is in metagenomics; however, I love everything population genetics and evolutionary biology wise and may be willing to collaborate. Even if I may really wish to work on a topic with you, there is a chance I may have to decline as I can't take on more project then time allows for. If you want to do a collaboration, reach out and we can see if it is something that is in scope for my work. I will do my best to point you to resources minimally if we can't work something.

Current Projects

  • Creation of biological workflows and automization of data processes for 'omic datasets.
  • Updating the Phylogenize tool databases
  • Comparing genomic architecture of the Lactobacillus family.

Past Projects 2020-2023

  • The creation of a cBioPortal instance for the a project in collaboration with the Total Cancer Center
  • De novo Assembly including hybrid scaffolding with optical genome mapping and 3rd generation sequencing data
  • Development of data provisioning system for ingress and egress of large quantites of data (Terabytes)
  • Creation of biological workflows and automization of data processes for onco-related 'omic datasets

Past Projects 2015-2020

  • Development of statiscial software for BSA visualization
  • Development of variant ranking packages using human population databases
  • Analysis and esablishment of hybrid populations of Zea mays
  • Mapping population characterization and genomic archetecture in landraces of Zea mays

Current Stats

Kathryn's Github Stats: All Time Kathryn's Github Stats: All Time Kathryn's Github Stats: All Time Kathryn's Languages: All Time Kathryn's Languages: All Time

Kathryn Kananen's Projects

anvio icon anvio

An analysis and visualization platform for 'omics data

bioicons icon bioicons

A library of free open source icons for science illustrations in biology and chemistry

bsa-analyser icon bsa-analyser

Unfinished Draft version of BSA analyzer from Cranfield mapping population project. - Public Ver

globusfs icon globusfs

Mount a Globus endpoint over Python-FUSE

metawrap icon metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

recontig icon recontig

Dynamic Contig Nomenclature Reassignment

undergraduate icon undergraduate

Scripts from various years 2015-2019 throughout undergraduate that have interest to lab projects. These scripts may need to stay up for multiple purposes for other researchers to access in multiple lab groups, or may be simply for archival purposes.

vargen icon vargen

VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the results. You can also use your own customised list of genes. VarGen is capable of annotating the variants to help you identify the most impactful ones.

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