When i run "conda env create -f environment.yaml -n phagcn", an "Pip failed" error occurred as below, i upgraded the pip but same error occurred, do you have ideas how to fix it? Thanks.
Channels:
- pytorch
- conda-forge
- bioconda
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: | By downloading and using the CUDA Toolkit conda packages, you accept the terms and conditions of the CUDA End User License Agreement (EULA): https://docs.nvidia.com/cuda/eula/index.html
done
Installing pip dependencies: \ Ran pip subprocess with arguments:
['/data5/baidefeng/miniconda3/envs/phagcn/bin/python', '-m', 'pip', 'install', '-U', '-r', '/data5/baidefeng/virus6/temp/PhaGCN/condaenv.zyqxs9c3.requirements.txt', '--exists-action=b']
Pip subprocess output:
Pip subprocess error:
ERROR: Exception:
Traceback (most recent call last):
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
status = self.run(options, args)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
return func(self, options, args)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/commands/install.py", line 269, in run
session = self.get_default_session(options)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 77, in get_default_session
self._session = self.enter_context(self._build_session(options))
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 87, in _build_session
session = PipSession(
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/network/session.py", line 275, in init
self.headers["User-Agent"] = user_agent()
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/network/session.py", line 132, in user_agent
linux_distribution = distro.linux_distribution() # type: ignore
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 125, in linux_distribution
return _distro.linux_distribution(full_distribution_name)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 681, in linux_distribution
self.version(),
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 741, in version
self.lsb_release_attr('release'),
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 903, in lsb_release_attr
return self._lsb_release_info.get(attribute, '')
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 556, in get
ret = obj.dict[self._fname] = self._f(obj)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 1014, in _lsb_release_info
stdout = subprocess.check_output(cmd, stderr=devnull)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/subprocess.py", line 415, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/subprocess.py", line 516, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '('lsb_release', '-a')' returned non-zero exit status 127.
Traceback (most recent call last):
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/main.py", line 31, in
sys.exit(_main())
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/main.py", line 71, in main
return command.main(cmd_args)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", line 104, in main
return self._main(args)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", line 221, in _main
self.handle_pip_version_check(options)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 143, in handle_pip_version_check
session = self._build_session(
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 87, in _build_session
session = PipSession(
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/network/session.py", line 275, in init
self.headers["User-Agent"] = user_agent()
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_internal/network/session.py", line 132, in user_agent
linux_distribution = distro.linux_distribution() # type: ignore
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 125, in linux_distribution
return _distro.linux_distribution(full_distribution_name)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 681, in linux_distribution
self.version(),
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 741, in version
self.lsb_release_attr('release'),
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 903, in lsb_release_attr
return self._lsb_release_info.get(attribute, '')
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 556, in get
ret = obj.dict[self._fname] = self._f(obj)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/site-packages/pip/_vendor/distro.py", line 1014, in _lsb_release_info
stdout = subprocess.check_output(cmd, stderr=devnull)
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/subprocess.py", line 415, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/data5/baidefeng/miniconda3/envs/phagcn/lib/python3.8/subprocess.py", line 516, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '('lsb_release', '-a')' returned non-zero exit status 127.
failed
CondaEnvException: Pip failed