kevbrick Goto Github PK
Name: Kevin Brick
Type: User
Company: Karius DX
Bio: Computational biologist @ Karius DX (NIH in my former life)
Twitter: kevbrick
Location: Bethesda, MD, USA
Name: Kevin Brick
Type: User
Company: Karius DX
Bio: Computational biologist @ Karius DX (NIH in my former life)
Twitter: kevbrick
Location: Bethesda, MD, USA
Analytic pipeline for long read genotyping of human PRDM9 (Alleva et al., 2021)
Pipeline to call DSB hotspots and estimate strength from single-stranded DNA sequencing (SSDS) data.
Peak calling pipeline for SSDS data
Config files used to define parameters specific to compute environments at different Institutions
List of Computer Science courses with video lectures.
Genotype PRDM9 from long read amplicon sequencing
Analysis of Chromosome Conformation Capture data (Hi-C)
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
Build a Jekyll blog in minutes, without touching the command line.
Analytic pipeline for Lam et al. 2019
Analytic pipeline for Mahgoub et al. 2020 (Zcwpw1)
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
Analyses for Mihola et al paper (rat DSB hotspots) 2021
Repository to host tool-specific module files for the Nextflow DSL2 community!
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
Analytic pipeline for Pratto et al. 2020
Infer template switches between parental alleles of PRDM9
Random_files
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Pipeline to infer replication timing from WGS data.
Replication timing simulation in mammalian genomes
Single-stranded DNA Sequencing (SSDS) nf-core pipeline
MultiQC with SSDS module
nf-core implementation of the SSDS pipeline
Nextflow version of the SSDS pipeline
Sequence alignment pipeline for ssDNA sequencing (SSDS) (Khil et al., Genome Res. 2012)
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.