Comments (4)
I think this is largely handled in Accessing_EuPathDB_Data.Rmd.
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It looks like there is an outdated version of the vignette still in the GH repo:
https://github.com/khughitt/EuPathDB/tree/master/vignettes
Is it safe to delete "Accessing_AnnotationHubData.Rmd"?
from eupathdb.
I dunno, I rather like it, it is a nice reminder of how to get stuff from annotationhub.
from eupathdb.
Whoops. At first glance I thought the documents were covering a lot of the same material, but now I realize that are different. I think it is just the title for the new vignette that needs to be updated..
To make it clear what each covers and how they fit into the larger package, how about renaming the files / updating the vignette titles to something along the lines of:
- EuPathDB_AnnotionHub_Tutorial.Rmd - "Accessing EuPathDB Resources Using AnnotationHub"
- EuPathDB_Package_Generation_Tutorial.Rmd - "Generating EuPathDB Bioconductor Packages Locally"
- EuPathDB_Developers_Guide.Rmd - "EuPathDB Package Developer's Guide"
This way it should be pretty obvious what the first two are doing, and also that the third one is aimed at developers as opposed to end-users.
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Related Issues (9)
- How to get current release (41) data of fugiDB through annotationhub HOT 23
- Update GRanges vignette HOT 3
- Create README.md
- EOFs sneaking into results from posting to the new webservices HOT 1
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- Cannot find OrgDB objects from EuPathDb in AnnotationHub
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