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S.A.Malec, PhD's Projects

lbd-covid icon lbd-covid

Drug repurposing for COVID-19 using literature-based discovery

mechspy icon mechspy

Mechanistic inference of toxicity from gene expression time series and knowledge graphs

medlinexmltodatabase icon medlinexmltodatabase

A command line Java application for parsing MEDLINE XML files and inserting the data into a relational database

nonlinearicp-and-condindtests icon nonlinearicp-and-condindtests

Code for a variety of nonlinear conditional independence tests and 'nonlinear Invariant Causal Prediction' to estimate the causal parents of a given target variable from data collected in different experimental or environmental conditions, extending 'Invariant Causal Prediction' from Peters, Buehlmann and Meinshausen (2016) to nonlinear settings.

obo-relations icon obo-relations

RO is an ontology of relations for use with biological ontologies

openke icon openke

An Open-Source Package for Knowledge Embedding (KE)

owl-nets icon owl-nets

Transforming OWL for statistical learning

pheknowlator icon pheknowlator

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

pythonrnohtyp icon pythonrnohtyp

repo for talk dec 16, 2014 at stag's head pub, houston on interoperability (commutatative) between python and r

reach icon reach

Reach Biomedical Information Extraction

semanticvectors icon semanticvectors

SemanticVectors creates semantic WordSpace models from free natural language text.

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