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4.0 2.0 2.0 105 KB

License: GNU General Public License v3.0

Python 100.00%
genome-rearrangment plastome circular-permutation signed-permutation permutations grimm

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arachis's Issues

TypeError: '<' not supported between instances of 'Chromosome' and 'Chromosome'

I got an exception when there are multiple chromosomes. It seemed that self.__chromosomes.sort() can not be sorted when self.__chromosomes have more than one Chromosome values.

Traceback (most recent call last):
  File "/share/home/app/.local/python3/bin/run_pypmag.py", line 4, in <module>
    __import__('pkg_resources').run_script('arachis==0.42.2', 'run_pypmag.py')
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/pkg_resources/__init__.py", line 666, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1469, in run_script
    exec(script_code, namespace, namespace)
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/EGG-INFO/scripts/run_pypmag.py", line 561, in <module>
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/EGG-INFO/scripts/run_pypmag.py", line 556, in main
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/EGG-INFO/scripts/run_pypmag.py", line 287, in reconstruct_ancestral_genomes
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/arachis/genomeClass.py", line 1358, in __init__
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/arachis/genomeClass.py", line 1381, in parse_grimm
  File "/share/home/app/.local/python3/lib/python3.6/site-packages/arachis-0.42.2-py3.6.egg/arachis/genomeClass.py", line 1272, in __init__
TypeError: '<' not supported between instances of 'Chromosome' and 'Chromosome'

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