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docker-ensembl

Dockerfile to build a container with the EnsEMBL Perl API and tools installed

docker-mode

Emacs mode for editing Dockerfiles

docs

Documentation

docs-travis-ci-com

The Travis CI Documentation

documentation-theme-jekyll

A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.

docx2txt

dpl

Dpl (dee-pee-ell) is a deploy tool made for continuous deployment.

dplyr

Plyr specialised for data frames: faster & with remote datastores

drake-examples

Example workflows for the drake R package

dvc-srf

Singularity recipe files for dvc (https://github.com/iterative/dvc)

easel

Sequence analysis library used by Eddy/Rivas lab code

editable-table

tiny jQuery/Bootstrap widget that makes a HTML table editable

emacs.d

Org-based emacs.d (with Pallet and req-package goodness)

email-folder-exchange

Read-only release history for Email-Folder-Exchange

ensc-core

C API for the Ensembl Database

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-analysis

Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ensembl-hive-slurm

Slurm Meadow for Ensembl Hive

ensembl-otter

The Otterlace genome annotation editor, and supporting code

ensembl-taxonomy

API for accessing NCBI taxonomy

ensembl-webcode

The code to run an Ensembl website

ensemblgenomes-api

Auxillary API for accessing Ensembl Genomes databases using the Ensembl Perl API

entrez-direct-srf

Singularity recipe files for entrez-direct (https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/)

env-modulecmd

Read-only release history for Env-Modulecmd

ep_sotauth

Etherpad Lite plugin to trust authentication passed in from X-Forwarded-User HTTP header. This is useful when running behind a reverse proxy (a "series of tubes") that handles authentication. Do not use this plugin unless you have protected the server so that it can only be accessed from the reverse proxy.

excel-reader-xlsx

Read data from an Excel 2007+/XLSX format file.

excel-writer-xlsx

Perl module to create Excel XLSX files.

exploring-packrat

understanding packrat as a reproducible research tool

ext.polleverywhere