A base image with curl and gosu installed, intended for multi-stage builds where curl is later dropped.
A base image with curl and gosu installed, intended for multi-stage builds where curl is later dropped.
A base image with curl and gosu installed, intended for multi-stage builds where curl is later dropped.
This is a Docker image of a vanilla iRODS 4.2.7 server that works out of the box. To be used for running tests only.
This is a Docker image of a vanilla iRODS >=4.2.11 server that works out of the box. To be used for running tests only.
The server version may be chosen by passing the Docker build argument
--build-arg IRODS_VERSION=<version>
(default is 4.3.0).
A makefile is supplied that will by default build all images and add
metadata to them based on git describe
.
cd ./docker
make
Each container that provides command line programs is self-documenting and is able to install its own proxy wrappers outside of the container, to allow these programs to be run transparently.
The images include the singularity-wrapper tool which allows programs to be listed and their wrappers installed. The install target should be set to a volume mounted into the container and the -p (install prefix) option of the tool set accordingly. The -h option will show online help.
e.g. Show online help:
$ docker run wsinpg/ub-18.04-irods-clients-4.2.11:latest \
singularity-wrapper -h
e.g. List the programs provided by a container:
$ docker run wsinpg/ub-18.04-irods-clients-4.2.11:latest \
singularity-wrapper list
{
"package": "irods-clients",
"executable": [
"baton-chmod",
...
"samtools"
]
}
e.g. Install wrappers to $PREFIX/bin:
$ docker run -v $PREFIX:/mnt/tmp \
wsinpg/ub-18.04-irods-clients-4.2.11:latest \
singularity-wrapper -p /mnt/tmp install
$ ls $PREFIX/bin
-rwxr-xr-x 1 kdj staff 406 Apr 12 15:47 baton-chmod
...
-rwxr-xr-x 1 kdj staff 409 Apr 12 15:47 samtools
Keith James [email protected]