ksil91 / ps-oly-larvae-growth

Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.

PS-Oly-Larvae-Growth

This is the repository for our paper comparing growth rates and reproductive timing among 3 Puget Sound populations of Olympia oysters (Ostrea lurida) across life stages.

The Products directory contains an Overleaf directory with .tex files to generate the current version of the manuscript, as well as the PDF from Scientific Reports.

Raw data can be found under data and on figshare.

R scripts used to generate publication figures and reproducible R notebooks (including Github-friendly .md versions) of the analyses used in the paper can be found under Analysis. This is my first try at making reproducible notebooks to go along with a paper and something I plan to continue to do going forward. If you try them out and have any feedback (e.g. on clarity, usefulness) please let me know!

Raw photos of tiles with juvenile oysters on them can be found here, organized by time point.

ps-oly-larvae-growth's Issues

Methods- G1 oysters at Clam Bay

*Calling our "F1s" and "F2s" now G1 and G2 to avoid confusion by quantitative genetics people that might think we actually crossed something.

Reading through Jake's methods, I noticed that the Fidalgo(NF) oysters outplanted at Clam Bay were significantly larger than the other 2 populations. Is this important to mention in my methods when talking about parent population?

In general, should I talk about the characteristics of the G1 oysters at Clam Bay observed in Jake's experiment (i.e. very few brooding females, water temperature)?