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Louis Bergelson's Projects

adam icon adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

bamsurgeon icon bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

barclay icon barclay

Command line argument parser and online documentation generation utilities for java command line programs.

brew icon brew

🍺 The missing package manager for macOS

coffeecatch icon coffeecatch

CoffeeCatch, a tiny native POSIX signal catcher (especially useful for JNI code on Android/Dalvik)

cromwell-tools icon cromwell-tools

A collection of Python clients and accessory scripts for interacting with the Cromwell

dataflow-java icon dataflow-java

Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.

dataflowtemplates icon dataflowtemplates

Google-provided Cloud Dataflow template pipelines for solving simple in-Cloud data tasks

disq icon disq

A library for manipulating bioinformatics sequencing formats in Apache Spark

fastai icon fastai

The fastai deep learning library, plus lessons and tutorials

gamgee icon gamgee

A C++ interface for NGS data formats

gatk icon gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

git icon git

Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.

git-aware-prompt icon git-aware-prompt

Display current Git branch name in your terminal prompt when in a Git working directory.

gkl icon gkl

Accelerated kernel library for genomics

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