Comments (2)
Is there some way to manage that? (pick one of the biomasses?) Or does that need to completely modify the test suite?
from fbcmodeltests.jl.
It requires us to identify when this happens and then dramatically change the test function unfortunately. Basically the biomass function for the older models looks something like this:
arginine + proline + ... + cysteine -> amino_acids
lipid_1 + lipid_2 -> all_lipids
...
amino_acids + all_lipids + ... -> biomass
I think they handle this in memote.py, but I forgot where...
from fbcmodeltests.jl.
Related Issues (20)
- Change default `ignored_reactions` to use SBO terms HOT 1
- Make a commandline tool that simplifies generating the FROG reports. HOT 2
- Implement all memote-style tests HOT 1
- Ensure memote-style tests work with most of the recognized namespaces by default
- Improve heuristic identification of transport reactions HOT 4
- Add additional tests HOT 4
- Organize tests into modules to make finding them easier from the repl HOT 1
- Investigate problem with reaction annotation regexes HOT 5
- verify SHA of all downloaded test files HOT 1
- TagBot trigger issue HOT 8
- use `Base.@kwdef` for setting up defaults for constant-holding structures HOT 2
- Group FVA in tests HOT 1
- usability questions HOT 10
- `fbcmt-compare-frog` should take tolerance parameters from the commandline HOT 1
- Metabolite duplication is too sensitive HOT 1
- Add more SBO annotation tests
- Reaction duplication ignores directionality
- Remove `parse_annotations` HOT 1
- parallelization params to run-frog HOT 1
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from fbcmodeltests.jl.