Comments (5)
example of what's wrong?
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Ping, is there an example?
from fbcmodeltests.jl.
I think this may have been fixed. @Fl-Sch @vm-vh could you compare the annotation output from our tests to that of memote and see if they correspond? If so, then this is fixed
from fbcmodeltests.jl.
Also add negative tests when sure that annotation checks are totally correct/can handle edge cases
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Fixed in #70
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Related Issues (20)
- Change default `ignored_reactions` to use SBO terms HOT 1
- Make a commandline tool that simplifies generating the FROG reports. HOT 2
- Implement all memote-style tests HOT 1
- Ensure memote-style tests work with most of the recognized namespaces by default
- Handle both lumped and split biomass function HOT 2
- Improve heuristic identification of transport reactions HOT 4
- Add additional tests HOT 4
- Organize tests into modules to make finding them easier from the repl HOT 1
- verify SHA of all downloaded test files HOT 1
- TagBot trigger issue HOT 8
- use `Base.@kwdef` for setting up defaults for constant-holding structures HOT 2
- Group FVA in tests HOT 1
- usability questions HOT 10
- `fbcmt-compare-frog` should take tolerance parameters from the commandline HOT 1
- Metabolite duplication is too sensitive HOT 1
- Add more SBO annotation tests
- Reaction duplication ignores directionality
- Remove `parse_annotations` HOT 1
- parallelization params to run-frog HOT 1
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