leezx / consurf-standalone Goto Github PK

Hi there!

First, thank you for providing this repository. It was the only way I could find to run ConSurf without so many errors.

Given the guidelines you provided, how long does it usually take to run ConSurf-StandAlone for a single protein?

I have been running it for +4 days for a single protein. I haven't identified any issue with the run, but it is still running.

Would you mind giving me any advice to speedup the process ?

Best,

Alex

Hi！ thank you for providing this repository. when i run make，there was an error，how to solve it：
make
make all-recursive
make[1]: Entering directory '/sda/liangjh/ConSurf/rate4site-3.0.0'
Making all in src/phylogeny
make[2]: Entering directory '/sda/liangjh/ConSurf/rate4site-3.0.0/src/phylogeny'
g++ -DHAVE_CONFIG_H -I. -I../.. -O3 -Wno-deprecated -I../../src -O3 -Wno-deprecated -MT someUtil.o -MD -MP -MF .deps/someUtil.Tpo -c -o someUtil.o someUtil.cpp
someUtil.cpp: In function ‘bool checkThatFileExist(const string&)’:
someUtil.cpp:348:18: error: no match for ‘operator==’ (operand types are ‘std::ifstream’ {aka ‘std::basic_ifstream’} and ‘long int’)
348 | if (file1==NULL) return false;
| ^
；；；；；；
/usr/include/c++/11/system_error:408:37: note: no known conversion for argument 1 from ‘std::ifstream’ {aka ‘std::basic_ifstream’} to ‘const std::error_condition&’
408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
someUtil.cpp: In function ‘void createDir(const string&, const string&)’:
someUtil.cpp:507:23: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
507 | system(sysCall.c_str());
| ~~~~~~^~~~~~~~~~~~~~~~~
make[2]: *** [Makefile:629: someUtil.o] Error 1
make[2]: Leaving directory '/sda/liangjh/ConSurf/rate4site-3.0.0/src/phylogeny'
make[1]: *** [Makefile:282: all-recursive] Error 1
make[1]: Leaving directory '/sda/liangjh/ConSurf/rate4site-3.0.0'
make: *** [Makefile:222: all] Error 2

Is there any alternative place to download the python wrapper?

https://consurf.tau.ac.il/STANDALONE/stand_alone_consurf-1.00.rar

Thanks,
Katie