lianzhh Goto Github PK

analysis-salt-responsive

Analysis of 16S sequencing data for paper "Salt-responsive gut commensal modulates TH17 axis and disease"

awesome-go-china

A curated list of awesome Go frameworks, libraries and software written by Ethnic Chinese.

bio101-metatranscript

books

常用书籍

canu

A single molecule sequence assembler for genomes large and small.

easy_ezbiocloud

batch upload 16S rRNA sequences search against EzBioCloud's database for identification

ggcor

Extended tools for correlation analysis and visualization.

googlesearchcrawler

a tool for crawl Google search results

i-vip

Integron Visualization and Identification Pipeline

integron_finder

Bioinformatics tool to find integrons in bacterial genomes

intervene-shiny

An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps

isfinder-sequences

Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

kggseq-go

krona

Interactively explore metagenomes and more from a web browser.

lcastar

Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree

megan-ce

MEGAN Community Edition

metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

multi-metagenome

ncbitax2lin

Convert NCBI taxonomy dump into lineages

paper_leesorensen_ismej_2017

Workflows and R scripts for Lee and Sorensen et al

phagcn

GCN classifier for phage taxanomy classification

phatyp

PhaTYP: Predicting lifestyle for bacteriophages using BERT

plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

plasmidminer

:mag: in silico plasmid extraction

r4ds

R for data science

rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

rnaseq-de-analysis-with-r

sickle

Windowed Adaptive Trimming for fastq files using quality

symtyper

symTyper project

tiptoft

Predict plasmids from uncorrected long read data