visiumStitched
provides helper functions for working with multiple
Visium capture areas that overlap each other. This package was developed
along with the companion example use case data available from
https://github.com/LieberInstitute/LS_visiumStitched. This packages,
among other utilities, it includes a function for plotting several
capture areas stitched together.
For details, check the documentation site.
Get the latest stable R
release from
CRAN. Then install visiumStitched
from
GitHub using the
following code:
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("LieberInstitute/visiumStitched")
Below is the citation output from using citation('visiumStitched')
in
R. Please run this yourself to check for any updates on how to cite
visiumStitched.
print(citation("visiumStitched"), bibtex = TRUE)
#> To cite package 'visiumStitched' in publications use:
#>
#> Eagles N (2024). _visiumStitched: Helper package for working with
#> stitched overlapping Visium capture areas_. R package version 0.99.0.
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Manual{,
#> title = {visiumStitched: Helper package for working with stitched overlapping Visium capture areas},
#> author = {Nicholas J. Eagles},
#> year = {2024},
#> note = {R package version 0.99.0},
#> }
Please note that the visiumStitched
was only made possible thanks to
many other R and bioinformatics software authors, which are cited either
in the vignettes and/or the paper(s) describing this package.
Please note that the visiumStitched
project is released with a
Contributor Code of
Conduct. By
contributing to this project, you agree to abide by its terms.
- Continuous code testing is possible thanks to GitHub actions through usethis, remotes, and rcmdcheck customized to use Bioconductor’s docker containers and BiocCheck.
- Code coverage assessment is possible thanks to codecov and covr.
- The documentation website is automatically updated thanks to pkgdown.
- The code is styled automatically thanks to styler.
- The documentation is formatted thanks to devtools and roxygen2.
For more details, check the dev
directory.
This package was developed using biocthis.