lindan1128 / apis-laboriosa-project Goto Github PK
View Code? Open in Web Editor NEWCodes of paper: Comparative Genomics Reveals Recent Adaptive Evolution in Himalayan Giant Honeybee Apis laboriosa
Codes of paper: Comparative Genomics Reveals Recent Adaptive Evolution in Himalayan Giant Honeybee Apis laboriosa
Hello,
In the paper about A. laboriosa, you estimated divergence time among species based on the concatenated alignments of 4-fold degenerate sites from single-copy genes using MCMCtree in PAML v4.9. But I can't find this step in your command lines.
Because I also want to estimated divergence time based on some conserved sequence, so how do you extract 4-fold degenerate sites from the concatenated alignments of single-copy genes ?
I'm looking forward to your reply, thanks
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