linuszh / webscraper

WebScraper

Executables

Windows Download here

Linux run from Source

Screenshots

Todo

Install source

pip install -r requirements.txt
python main.py

Input

HTML:

Add as many MPI-SHH MAscot Report GEnerator HTML files as you like. Will scrap the relevant information

The scraper expects the table inside of the HTML in the following layout:

Excel Sheet:

The Excel sheet should be in this style for the scraper to work.

Speciem	Accession	Protein Description (GN=)	Number of Peptides	Link

Output

Speciem	Accession	Protein Description (GN=)	Number of Peptides	Link	Tissue specificity	Tissue expression cluster	specific	status
							If Tissue specificity or Tissue expression cluster contain the word "brain", it's yes else no	0=not crawled, 1 = successfully crawled, 2= not found

references

Insert DOI here