lorenfranklab / franklab-nwb-hack Goto Github PK

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AttributeError                            Traceback (most recent call last)
<ipython-input-10-04a926256d6c> in <module>
     43 pos_series = position['spatial_series']
     44 sleep_fig = flh.plot_position_by_epochs(animal, pos_series, np.array(epoch_time_ivls),
---> 45                                         sleep_epochs, 'Sleep box epochs: animal %s, day %s' % (animal, day))
     46 wtrackA_fig = flh.plot_position_by_epochs(animal, pos_series, np.array(epoch_time_ivls),
     47                                           wtrackA_epochs, 'W-track A epochs: animal %s, day %s' % (animal, day))

~/dev/franklab-nwb-hack/hackathon-6/fl_extension_helpers.py in plot_position_by_epochs(animal, pos_series, epoch_ivls, epochs, title)
    227     samples = pd.DataFrame(data=pos_series.data[()], columns=['x', 'y'])
    228     sample_times = pos_series.timestamps[()]
--> 229     valid_intervals = query.TimeIntervals(epoch_ivls)
    230     position = query.ContinuousData(samples=samples, 
    231                                     sample_times=sample_times,

~/dev/franklab-nwb-hack/hackathon-6/nwb_query.py in __init__(self, bounds)
     55 
     56     def __init__(self, bounds=None):
---> 57         self.intervals = self.__make_intervals(bounds)
     58 
     59     def __make_intervals(self, bounds):

~/dev/franklab-nwb-hack/hackathon-6/nwb_query.py in __make_intervals(self, bounds)
     63         elif (isinstance(bounds, np.ndarray) and bounds.ndim == 2 and bounds.shape[1] == 2):
     64             # input is a 2D (m x 2) numpy array
---> 65             intervals = iv.empty()
     66             for ivl in bounds:
     67                 intervals = intervals | iv.closed(*ivl)

AttributeError: module 'intervals' has no attribute 'empty'