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Aaron Lun's Projects

pcatools icon pcatools

PCAtools: everything Principal Components Analysis

powerit icon powerit

Lightweight C++ library for power iterations

pseudocount2018 icon pseudocount2018

Some thoughts on choosing an appropriate pseudo-count for log-transformation of scRNA-seq counts.

qdtsne icon qdtsne

A quick-and-dirty t-SNE implementation as a header-only library

r-source icon r-source

Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.

rcpphnsw icon rcpphnsw

Rcpp bindings for the approximate nearest neighbors library HNSW

rebook icon rebook

Clone of the Bioconductor repository for the rebook package.

repertoireutils icon repertoireutils

Utilities for analyzing repertoire sequencing data, to be used in the OSCA book.

residualmatrix icon residualmatrix

Clone of the Bioconductor repository for the ResidualMatrix package.

rhdf5 icon rhdf5

Package providing an interface between HDF5 and R

rsvd icon rsvd

Randomized Matrix Decompositions using R

rtsne icon rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

rtsnetestsuite icon rtsnetestsuite

Tests the Rtsne package against the original bhtsne implementation.

s4vectors icon s4vectors

Foundation of vector-like and list-like containers in Bioconductor

sarlacc icon sarlacc

The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.

scaledmatrix icon scaledmatrix

Clone of the Bioconductor repository for the ScaledMatrix package.

scdblfinder icon scdblfinder

A simple, efficient tool to detect doublet cells directly from scRNAseq count data

scran.chan icon scran.chan

A slimmed down version of scran, based on the C++ library of the same name.

scran.jl icon scran.jl

Julia bindings for the libscran library.

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