lucaslegendre / eggshell_review

Contains the dataset, phylogenetic tree, and R code related to analyses for the eggshell review project, as published in Legendre et al. (2022, Journal of Anatomy).

eggshell_review

Contains the dataset, phylogenetic tree, and R code related to analyses for the following study:

Legendre, L. J., S. Choi, and J. A. Clarke. 2022. The diverse terminology of reptile eggshell microstructure and its effect on phylogenetic comparative analyses. Journal of Anatomy 241:641–666.

File description:

• 'Eggshell_review_project.html': HTML tutorial for the code used in the paper (all references and a detailed description of the protocol can be found in the online Supplementary Information of the paper)

• 'Eggshell_review_project.Rmd': original R script used to generate the HTML file, in Markdown format

• 'Datawhole_newproject.txt': dataset in TXT format, containing egg measurements and scoring for all three scoring procedures for 208 species of reptiles (fully referenced version is included as Supplementary Table 1 in Legendre et al., 2022)

• 'treewhole_newversion.trees.nex': phylogenetic tree for dataset, in NEXUS format