lucatriboli / dimhepy Goto Github PK
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Python module that provide an alternative view of the outputs produced by the software pyani
Dear Dr Triboli Luca,
While running DimHepy, from pyani conda env, i am facing the following problem
(pyani) dir $ python /home/hacker/DiMHepy/DiMHepy.py -i dimhepy_input -o dimhepy_pyani_image -oss dimhepy_pyani_image/test.png -s -d -ignDiag
pyani is working, please wait
pyani has finished, now SoftStar is working
Traceback (most recent call last):
File "/home/hacker/DiMHepy/DiMHepy.py", line 84, in <module>
percentageIdentityMatrix, nameList = MatrixFromFile(percentageIdentityFileName)
File "/home/hacker/DiMHepy/DiMHepy.py", line 33, in MatrixFromFile
nameList[-1] = nameList[-1][:-1]
IndexError: list index out of range
The input directory contains tab files generated from pyani result
(pyani) dir$ ls -lh dimhepy_input/
total 260K
-rwxrwxrwx 1 hacker hacker 63K Sep 5 04:51 ANIb_alignment_coverage.tab
-rwxrwxrwx 1 hacker hacker 34K Sep 5 04:51 ANIb_alignment_lengths.tab
-rwxrwxrwx 1 hacker hacker 63K Sep 5 04:51 ANIb_hadamard.tab
-rwxrwxrwx 1 hacker hacker 61K Sep 5 04:51 ANIb_percentage_identity.tab
-rwxrwxrwx 1 hacker hacker 30K Sep 5 04:51 ANIb_similarity_errors.tab
(pyani) dir$ ls -lh dimhepy_pyani_image/
total 0
-rwxrwxrwx 1 hacker hacker 3 Sep 19 21:50 ANIm_alignment_coverage.tab
-rwxrwxrwx 1 hacker hacker 3 Sep 19 21:50 ANIm_alignment_lengths.tab
-rwxrwxrwx 1 hacker hacker 3 Sep 19 21:50 ANIm_hadamard.tab
-rwxrwxrwx 1 hacker hacker 3 Sep 19 21:50 ANIm_percentage_identity.tab
-rwxrwxrwx 1 hacker hacker 3 Sep 19 21:50 ANIm_similarity_errors.tab
-rwxrwxrwx 1 hacker hacker 216 Sep 19 21:50 nucmer_output.tar.gz
input files
ANIb_alignment_coverage.csv
ANIb_alignment_lengths.csv
ANIb_hadamard.csv
ANIb_percentage_identity.csv
ANIb_similarity_errors.csv
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