lunarplugins / slicerpathology

3D Slicer extension for Pathology segmentation tools

3D Slicer Pathology Extension

This is work in progress to develop tools for automatic and semi-automatic pathology segmentation tools for use as an extension within 3D Slicer (http://slicer.org).

Contact

• Lead developer: Erich Bremer (https://github.com/ebremer [email protected])
• Project PI: Joel Saltz (https://bmi.stonybrookmedicine.edu/people/joel_saltz)
• Algorithm Development: Yi Gao (https://github.com/gaoyi)

Acknowledgments

Additional Coding and 3D Slicer programming support:
Nicole Aucoin (https://github.com/naucoin)
Andrey Fedorov (https://github.com/fedorov)
Jean-Christophe Fillion-Robin (https://github.com/jcfr)

This work is supported by:

• U24 CA180924 Tools to Analyze Morphology and Spatially Mapped Molecular Data, PI Joel Saltz, Stony Brook University
• U24 CA180918 Quantitative Image Informatics for Cancer Research (QIICR), http://qiicr.org, PIs Ron Kikinis and Andrey Fedorov, Brigham and Women's Hospital

Usage instructions

https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerPathology