luo-chengwei / metahgt Goto Github PK

I am using metaHGT with the bam files already created. I'm using the commands as told in the presentation of the software and it recognizes the bam and bai files. Bellow, I put the command and error report. Is it something missing in the command, a problem with the files or a bug?

$ metaHGT.py -l 1,2,3,4,5,6,7 -o output -b bam/
metaHGT started at Wed Aug 23 18:10:15 2017
Now calculating HGT events...
[1.vs.2] Initiating...
[1.vs.2] Interpreting BAMs...
Now estimating the read library size...
[Library 1] mean +/- std: 183.194 +/- 47.654
[Library 2] mean +/- std: 196.994 +/- 59.592
Scanning for hotspots...
Traceback (most recent call last):
File "/services/tools/metahgt/20131227/bin/metaHGT.py", line 405, in
main()
File "/services/tools/metahgt/20131227/bin/metaHGT.py", line 380, in main
HGTs = calHGT.calHGT(projInfo)
File "/services/tools/metahgt/20131227/bin/calHGT.py", line 515, in calHGT
HGTs = HGTscan(bamfhs, lib_stats, projInfo)
File "/services/tools/metahgt/20131227/bin/calHGT.py", line 461, in HGTscan
HGTs = HGT_search(lib_stats, bamfhs, projInfo)
File "/services/tools/metahgt/20131227/bin/calHGT.py", line 367, in HGT_search
binID0 = re.search('(.+).contig\d+', ref0).group(1)
AttributeError: 'NoneType' object has no attribute 'group'