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lutfia95.github.io

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minigraph

Proof-of-concept seq-to-graph mapper and graph generator

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

ont_minimap2

openssl

TLS/SSL and crypto library

pod5-file-format

Pod5: a high performance file format for nanopore reads.

prometheus

The Prometheus monitoring system and time series database.

psix

pymod

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

qpp

Modern C++ quantum computing library

rawmap

Complements Minimap2 for a fast and efficient Read-Until pipeline

raxmlgrove

read_until_api

Read Until client library for Nanopore Sequencing

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scavengerhunt

seqan

SeqAn's official repository.

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

spumoni

Pan-Genomic Matching Statistics

taxor

Fast and space-efficient taxonomic classification of long reads

toml11

TOML for Modern C++

ultra

uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation

yak

Yet another k-mer analyzer