Comments (1)
Magdoll
commented on May 28, 2024
Hi @defendant602 ,
I am aware of this issue and this is becuz of several dependency updates.
- Please update to SQANTI2 v3.5
- Please update Cupcake to v8.1
- Please install gffread and gtfToGenePred using BioConda
conda install -n anaCogent3 -c bioconda ucsc-gtftogenepred openssl=1.0
conda install -n anaCogent3 -c bioconda gffread
from sqanti2.
Related Issues (20)
- input isoforms.fasta for chain_samples.py HOT 4
- isoform map to scaffold which without reference gene HOT 1
- Assertion Error HOT 7
- gene_id annotation HOT 2
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- Tamma Collapse for 5' cap selected samples HOT 1
- sqanti2_qc.py fails with assertion error HOT 6
- Isoform class transcript distribution versus rarefaction curve HOT 1
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- sqanti_filter.py HOT 4
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