pip install -r requirements.txt-
Your VCF file: you should get this from a full genome sequencing company.
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Your reference FASTA file: you can check your VCF metadata for which reference genome it uses. In most cases it will be hg38, which you can download here: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_genomic.fna.gz
python3 main.py --vcf path_to_your.vcf --fasta GCF_000001405.26_GRCh38_genomic.fna