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auth0sqlalchemy

SQL Alchemy Basic Concepts

barcodesplitter

Reads FASTA/FASTQ file and splits it into several smaller files, based on barcode matching.

cnv_analyzer

Python script to cross copy number window values versus gene bed coordinates

comparemethylationvalues

Methylation Bedgraph files comparison

cpgstats

cpgStats is a C application to parse CpG Dinucleotides file and get a summary of statistics and bed file annotation.

diffexprpermutation

From a gene expression file, looks for differential expressed genes by calculating a p value through a Montecarlo Permutation. This pvalue is corrected by False Discovery Method.

django-autocomplete-light

A fresh approach to autocomplete implementations, specially for Django. Status: v3 stable, 2.x.x stable, 1.x.x deprecated. Please DO regularely ping us with your link at #yourlabs IRC channel

docker-ruby

Ruby Docker images with additional software packages, and Bundler too

dp_and_gq_filter

VCF filter for Singularity Conatiner

fai2split

Genome regions generations

fastqcoverage

Paired End and Single End Fastq Coverage Downsampling

fqqualchange.c

Change FASTQ qualities

gatk_nightly

GATK 3.6 Nigthly version

gemtools

GEMTools main repository

gemtools-cnv

Copy Number Pipeline using gem mapper and gem tools

heatmapucsc

Create Heatmap tracks from Bedgraph file to visualize in UCSC Genome Browser instances

htmlhubmanager

jipbspipeline

JIP Scripts to run BS pipeline

jipcnvpipeline

Set of JIP scripts to manage the CNV pipeline in three steps.

jippcrduplicates

JIP script to perform all pipeline steps, controlling each step dependency and output, to get PCR statistics

materials

Bonus materials, exercises, and example projects for our Python tutorials

mylibrary

Flask application just for learning basics about REST API web services.

react-time-line

A react component to display event in a vertical timeline format

readnameclean

Simple SAM header read cleaner, removes @

rnalimsdaemon

rnaseqjip

samcleanname

Simple SAM header read cleaner, removes @

singularitygembs

Singularity Recipe to build a GEMBS container.

testredsouce

vcfmethstatscollector

Basic Variant Calling File Stats