Comments (1)
The QNAME isn't used for fetching reads, so when you choose a location, it should match the chromosome, meaning RNAME in the BAM.
What are you entering when choosing a location?
Can you include ones of the lines from the BAM that you were expecting to show up from this query? e.g. using samtools view
with that same region you are trying to fetch reads from. If samtools view
on that region doesn't work, then it won't work here either, since Ribbon uses samtools to fetch reads.
from ribbon.
Related Issues (20)
- error loading coords file HOT 1
- unable to load BAM files HOT 7
- Scale chromosomes by size when viewing coordinates? HOT 1
- Installation help HOT 1
- output file HOT 1
- genomeribbon.com down? HOT 2
- "Aw, Snap!" on Chrome HOT 2
- question about permalink configurations HOT 3
- Links Not Working on Linux HOT 2
- Fusions from Short Read Illumina Data HOT 2
- Converting mummer alignment to bam, sam or coord-ITH format HOT 2
- Ribbon HOT 1
- load a bigger sam file HOT 1
- PG lines error although only one line contains the @PG header HOT 13
- upload data from server HOT 1
- Running Ribbon without internet access HOT 16
- how to remove expand regions from selected region HOT 2
- Filtering reads with multi-read settings HOT 5
- MUMmer does not identify regions from positive control samples HOT 1
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from ribbon.