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bioconda-recipes

Conda recipes for the bioconda channel.

datasets-sars-cov-2

Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)

lcs

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mt

nextflow-mwe

Minimal, workable example of Nextflow

nf-test

Simple test framework for Nextflow pipelines

pcago

PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

plotcoverageexons.py

Plot the coverage at some specific region from multiple bam files

porecov

SARS-CoV-2 workflow for nanopore sequence data

rearrangefasta

reorganizepictures

Reorganize jpg files in a directory.

ribap

A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

samclipy

Filter SAM file for soft-clipped alignments

vidhop

VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

vscode-language-nextflow

Nextflow language support for Visual Studio Editor

wf-mpx