Partanalyzer aims at being a general program for analyzing (sets of) partitions. It's useful for clustering problems in general, and in particular for bioinformatics problems dealing with multiple sequence alignments.
License: Other
HTML 32.26%CSS 0.59%Makefile 0.84%TeX 15.09%Shell 0.16%C++ 51.05%
partanalyzer's Introduction
In order to compile just issue
make
this updates the tags file and generates the executable.
To (re)build the documentation issue
make documention
To remove the executable and tags file
make distclean
List of contents:
dir Docs Code documentation automatically generated with doxygen. Depends on how good the comment lines in the source code are.
dir Tests Contains several tests files and scripts to check the partanalyze executable.
dir src Contains all source files and corresponding Makefile to build the executable.
file Doxyfile Configuration file for doxygen. Required to build the Docs directory.
file Makefile Makefile for partanalyze, its tests and documentation.
file MAN Brief manual for partanalzer. Basically contains the full help output one gets with `partanalyze --help'.
file README This file.
file TODO Lists pending improvements
file src/kk.cc Testbench for implementing unfamiliar C++ code, like using the library dirent.h for dealing with directories.