mat-o-lab / knowledgeui Goto Github PK

When the app is launched we query the database to fill the sunburst. In our python script the whole app just fail when the result is not what we want. When we want to work on other parts of the project we get stuck about that because we are not able to make it work. It would be a great idea to add a debug/or dev parameter to be able to launch the app even if the database isn't accessible.

Button save as CSV is not working.

Currently there is a problem with the usage of YASGUI in Sparklis, osparklis.js cant access the div with id "sparklis-yasgui" (for some reason) which causes the YASGUI initialization to fail. This does work when running the normal sparklis html and js locally, but there might be an issue with the flask or jinja interaction with the script. The current 'fix' simply removes the alert function and hides the yasgui button.

Sparql endpoint: https://fuseki.matolab.org/openbismantic/sparql

File and line:

Query:
PREFIX owl: http://www.w3.org/2002/07/owl#
PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema#
SELECT ?c (MIN(?label) AS ?label1) ?superclass (count(?x) as ?count) WHERE {
?x a ?c .
OPTIONAL {?c rdfs:label ?label} .
?c rdfs:subClassOf ?superclass.
filter (?c != ?superclass &&
!exists {?c rdfs:subClassOf ?othersuper. ?othersuper rdfs:subClassOf ?superclass.
filter(?c != ?othersuper && ?othersuper != ?superclass)})
} group by ?c ?label1 ?superclass HAVING(?count > 1) order by desc(?count)

make overview sunburst diagram link to sparklis interface, querying for the list of individuals of the class clicked on

1-Currently when we activate the view toggle before selecting a query the visualization never happens. To be able to see it we need to refresh the page.
2-The names of the nodes and the relations needs to be shorten to their labels/ids.
3-The style of the visualization should be changed to make it more readable.

Translate
SPARQL queries from Helena

To SPARKLIS Natural Language.

In this way, creating more predefined queries to be add to our KnowledgeUI.

the class hierarchy query takes to long maybe its better to have this on the server side

https://github.com/Mat-O-Lab/SequentialLearningApp

For help: the main developer is Zia ([email protected]), from BAM.

https://github.com/ornlpmcp/ASCENDS