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split10x's Introduction

Split10x

Given a bam file from 10x genomics with barcode inforamtion and a phased-vcf (again by 10x), generate two bams that contain the reads from each haplotype.

Usage: split10x reads.bam vars.vcf hap_base max_molecule_length

max_molecule_length is the maximum expected size of a barcoded fragment of DNA.

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