mchizk1 / shinyfruit Goto Github PK

Using the step 2 'Despeckle' option causes problems with subsequent inputs causing inconsistent analysis and crashes when accessing save file directories.

Hi, some troubles when running
devtools::install_github("mchizk1/ShinyFruit", build_vignettes = T) both on RStudio desktop swell as RStudio Cloud. I working on Mac Air (m1) see below

devtools::install_github("mchizk1/ShinyFruit", build_vignettes = T)
Downloading GitHub repo mchizk1/ShinyFruit@HEAD
Installing 1 packages: imager
Installing package into ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.2’
(as ‘lib’ is unspecified)
trying URL 'http://rspm/default/__linux__/focal/latest/src/contrib/imager_0.42.13.tar.gz'
Content type 'application/x-gzip' length 4817758 bytes (4.6 MB)
==================================================
downloaded 4.6 MB

• installing source package ‘imager’ ...
  ** package ‘imager’ successfully unpacked and MD5 sums checked
  ** using staged installation
  checking for pkg-config... /usr/bin/pkg-config
  checking whether the C++ compiler works... yes
  checking for C++ compiler default output file name... a.out
  checking for suffix of executables...
  checking whether we are cross compiling... no
  checking for suffix of object files... o
  checking whether we are using the GNU C++ compiler... yes
  checking whether g++ -std=gnu++14 accepts -g... yes
  checking how to run the C++ preprocessor... g++ -std=gnu++14 -E
  checking for X... libraries , headers
  checking for XOpenDisplay in -lX11... yes
  X11 library found.
  configure: Checking if FFTW3 library is available using pkg-config
  checking for pkg-config... /usr/bin/pkg-config
  checking pkg-config is at least version 0.9.0... yes
  checking for FFTW... yes
  FFTW3 found!
  checking whether pkg-config knows about libtiff-4... yes
  checking for configurable backends... checking whether --static is needed... no
  checking for g++ -std=gnu++14 option to support OpenMP... -fopenmp
  configure: creating ./config.status
  config.status: creating src/Makevars
  ** libs
  g++ -std=gnu++11 -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -Dcimg_use_fftw3 -I/usr/include/x86_64-linux-gnu -Dcimg_use_tiff -I../inst/include -DCIMG_COMPILING -Dcimg_use_rng -Dcimg_use_r -Dcimg_use_fftw3_singlethread -Dcimg_verbosity=1 -Dcimg_date='""' -Dcimg_time='""' -I'/cloud/lib/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  g++ -std=gnu++11 -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -Dcimg_use_fftw3 -I/usr/include/x86_64-linux-gnu -Dcimg_use_tiff -I../inst/include -DCIMG_COMPILING -Dcimg_use_rng -Dcimg_use_r -Dcimg_use_fftw3_singlethread -Dcimg_verbosity=1 -Dcimg_date='""' -Dcimg_time='""' -I'/cloud/lib/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c colourspace.cpp -o colourspace.o
  g++ -std=gnu++11 -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -Dcimg_use_fftw3 -I/usr/include/x86_64-linux-gnu -Dcimg_use_tiff -I../inst/include -DCIMG_COMPILING -Dcimg_use_rng -Dcimg_use_r -Dcimg_use_fftw3_singlethread -Dcimg_verbosity=1 -Dcimg_date='""' -Dcimg_time='""' -I'/cloud/lib/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c coordinates.cpp -o coordinates.o
  g++ -std=gnu++11 -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -Dcimg_use_fftw3 -I/usr/include/x86_64-linux-gnu -Dcimg_use_tiff -I../inst/include -DCIMG_COMPILING -Dcimg_use_rng -Dcimg_use_r -Dcimg_use_fftw3_singlethread -Dcimg_verbosity=1 -Dcimg_date='""' -Dcimg_time='""' -I'/cloud/lib/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c display.cpp -o display.o
  g++: fatal error: Killed signal terminated program cc1plus
  compilation terminated.
  make: *** [/opt/R/4.2.1/lib/R/etc/Makeconf:177: display.o] Error 1
  ERROR: compilation failed for package ‘imager’
• removing ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.2/imager’

The downloaded source packages are in
‘/tmp/Rtmpga7T7S/downloaded_packages’
✔ checking for file ‘/tmp/Rtmpga7T7S/remotesf71a42071b/mchizk1-ShinyFruit-bb14698/DESCRIPTION’ ...
─ preparing ‘ShinyFruit’:
✔ checking DESCRIPTION meta-information ...
─ installing the package to build vignettes
-----------------------------------
ERROR: dependency ‘imager’ is not available for package ‘ShinyFruit’
─ removing ‘/tmp/RtmpKMT2am/Rinst3ad1887b636/ShinyFruit’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'ShinyFruit' from GitHub:
! System command 'R' failed
In addition: Warning message:
In i.p(...) : installation of package ‘imager’ had non-zero exit status