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Name: Microbiological Diagnostic Unit Public Health Laboratory
Type: Organization
Bio: Australian national reference laboratory for Salmonella, Listeria and EHEC.
Location: Melbourne, AUSTRALIA
Name: Microbiological Diagnostic Unit Public Health Laboratory
Type: Organization
Bio: Australian national reference laboratory for Salmonella, Listeria and EHEC.
Location: Melbourne, AUSTRALIA
A pipeline for running AMRfinderPlus and collating results into functional classes
Convert DNA alignments between BioPython-supported formats.
Cultivate your multiple sequence alignments to get better trees
A pipeline for bioinformatics analysis of bacterial genomes
a Python tool to count RNA-seq reads mapping to genomic features
a cgMLST pipeline tool for public health
Shiny app for creating Venn diagrams of SARS-CoV-2 variant/lineage mutations.
Data for publications related to Victorian SARS-CoV-2 genomic epidemiology
Data for publications related to Victorian CPE surveillance and genomic epidemiology
A pipeline to make an MDU kraken DB
A small library to return temporary decompressed files when one needs them.
Anders testing
emm Automatic Isolate Labeller
Detect Hepatitis A Virus Infection Clusters
👋🎓 in silico typing of the H. influenzae cap locus
Some scripts for MDU data
Joins nullabor mlst2.tab files into mlst2 super table (csv), or resistome.csv files into super resistome table (csv)
Fast trees for SARS-CoV-2
Some helpful (or not) scripts for wrangling MDU data
In silico serotype prediction for Listeria monocytogenes
Make your read set prokka safe before running Nullarbor
Small tools/scripts written in python
Scripts for dealing with internal MDU filesystem structure
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)
Make an input file for nullarbor under diverse conditions.
An R script to summarise pairwise SNP differences among groups of samples.
With a file of isolate IDs as input, compile all results (abricate, kraken, mlst) into a single table and infer an NJ tree using the alignment-free Andi phylogenomic software.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.