Comments (1)
Just a quick note as I'm passing through this: When we do this we need to think of a way that doesn't require a specific design that locks us in with Prodigal for gene calling. A generic design that can keep track of additional features for genes (or genomic regions, or nucleotides, or codons) that can also be populated from Prodigal output.
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Related Issues (20)
- [BUG] Insert a short but descriptive title (leave the '[BUG]' part) HOT 1
- DAStool finishes without errors but output not recgnized by Anvi'o HOT 3
- [BUG] Issue with --pre-computed-inversions HOT 2
- Performing `anvi-self-test` but the interactive operator did not load in Chrome HOT 1
- [FEATURE REQUEST] A command to make new HMM sources from a list of COG IDs. HOT 12
- Problems about Structure Display with anvi-display-structure HOT 7
- [BUG] anvi-interactive crashes when using a collection and a external tree HOT 8
- [BUG] anvi-get-sequences-for-hmm-hits in combination with --gene-names silently removes genomes HOT 7
- anvi-setup-scg-taxonomy and anvi-setup-ncbi-cogs error HOT 2
- [BUG] Genes with multiple annotations overinflate stepwise pathway copy number values HOT 5
- No "load bin collection" button HOT 1
- [BUG] Anvio should clear the tmp directory when done, and respect $TMPDIR HOT 2
- Ncbi-genome-download
- [DISCUSSION] UI Improvements HOT 21
- [BUG] no reads passing iu-filter-quality-minoche HOT 3
- [BUG] KeyError occured after running anvi-estimate-metabolism HOT 8
- [BUG] ValueError occurred after running anvi-reaction-network HOT 3
- [BUG] Potential computation in `anvi-get-pn-ps-ratio` is incorrect HOT 2
- [BUG] anvi-split does not split item additional metadata HOT 1
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