Comments (3)
Hello @aeladly91, could you give a bit more detail about your setup so I can try to replicate this? Did you install spikeinterface with pip, and then herdingspieks with pip too?
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I have the same issue. When I create a conda env for spikeinterface, I tried to installed herdingspike in the environment, but got an error.
I first create a conda env python = 3.8, then installed requirements by pip: pip install -r requirements.txt
numpy
h5py
tqdm
click
pillow
scipy
matplotlib
seaborn
networkx
ipympl
scikit-learn
pyqt5
herdingspikes
jupyter
pyqtwebengine
pynwb
docker
probeinterface
spikeinterface[full]==0.90.1
phy==2.0b1
It failed with an error message:
Then installed herdingspikes by:
pip install numpy scipy
pip install herdingspikes
It failed with error:
Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
ERROR: Failed building wheel for herdingspikes
Running setup.py clean for herdingspikes
Failed to build herdingspikes
Installing collected packages: herdingspikes
Running setup.py install for herdingspikes ... error
Looking forward to hearing from you!
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I see, so @Virginia9733 , you are trying to install on Windows. Here you need to install the MS Visual Studio Build Tools first:
https://visualstudio.microsoft.com/downloads/#build-tools-for-visual-studio-2017
We know the 2017 version works, hopefully more recent versions will also be ok.
Can you check if this helps?
@ahmeddeladly , do you have the same problem?
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Related Issues (20)
- `probe.py` path does not exist error when `RecordingExtractor` is called from SpikeToolkit
- Detection state is saving the wrong cutout_length
- Version in __version__ HOT 7
- clustering using DBSCAN HOT 1
- bug with HS 0.3.7 HOT 2
- Run `HS2` without probe file HOT 2
- version 0.3.99 fails at importing probe utils HOT 1
- Version 0.3.100 fails at import HOT 3
- bug with the 0.3.7 version HOT 2
- Localization difference between BioCam and RecordingExtractor objects HOT 4
- create_probe_files leading to write OSError HOT 3
- Cant run herdingspikes HOT 3
- Trouble running HS on Spikeinterface HOT 5
- HS on Spike Interface HOT 1
- Kernel died when using herdingspikes in SpikeInterface HOT 2
- Build fails on Windows 10 HOT 3
- HerdingSpike through SpikeInterface wrongly scales waveform. HOT 1
- Issue using tutorial jupyter notebook (localised_spikes_clustered-biocam) HOT 2
- HS2 fails to build with Build Tools 2022 HOT 1
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