Comments (4)
@cmungall Mark B is still does not yet have permission to return to work (from Customs & Immigration). Hopeful that he can return next month, but in the meantime, Dave Millard is probably in the best position to speak to this.
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Decision for now: leave the schema flexible. E.g., studies can be parts of studies, which can be parts of other studies, etc.
This will hopefully allow us to meet different organizational needs.
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@lamccue are you okay with closing this in favor of the work that is happening in the study refresh squad #study
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yes, we should close this issue, thanks @aclum
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Related Issues (20)
- has_unit does not appear as a slot for QuantityValue in the online documentation ?
- Split up MetatranscriptomeActivity like metaG was HOT 2
- `napa_compliance` branch: Make `insert_many_pymongo.py` more robust HOT 1
- Deprecate MetagenomeSequencingActivity
- `nmdc.owl` is being generated with URIs like `<https://w3id.org/mixs/depth>` not `<https://w3id.org/mixs/0000018>` HOT 3
- Update Code of conduct with staff feedback
- Update `extract_study` command to search Legacy IDs
- workarround: generate RDF joining element labels to id-based IRIs
- Check referential integrity of Napa squad's MongoDB database via SPARQL in Fuseki
- Add `associated_studies` onto Biosample and make part_of not required for Biosample
- Developer documentation and `Dockerfile` contradict one another HOT 3
- try robot extract -> gra.fo in berkeley schema (for proteolytic cleavage)
- capture ideas about proteolytic cleavage from 2024-01-29 OBI call
- provide documentation for SPARQL referential integrity checks in Fuseki in Docker
- make sure nmdc-schema documentation is getting published
- Poetry conflicts between host's Poetry .venv and Docker container's .venv HOT 4
- rewrite slash-containing MS/MS file type permissible value
- Improve logging for database tools: extract-study. Warn for missing Data Objects
- remove `Reaction` and repurpose `has_part` (with domain and range Any?) in nmdc-schema as well as berkeley-schema-fy24
- NMDC Capture of Alternate and Related Identifiers HOT 2
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