mit-ai-accelerator / magnav.jl Goto Github PK

hi,
I have studied the relevant documents and algorithms. But I cannot run the program, example_ Sgl. jl I am using Julia 1.9.1. The error reminder is :
The error reminder is different :

julia> include("example_sgl.jl")
Activating project at C:\Users\gr\MagNav.jl-master
[ Info: Precompiling MagNav [f91b31a4-be4d-40e3-b767-4b8c09c10076]
ERROR: LoadError: InitError: could not load library "D:\Julia-1.9.1\juliaPKG\artifacts\5d74056071181523cbb62efeddd86132d4db12de\bin\libboost_atomic.dll" The specified procedure could not be found.
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl .\libdl.jl:117
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl .\libdl.jl:116
[3] macro expansion
@ D:\Julia-1.9.1\juliaPKG\packages\JLLWrappers\QpMQW\src\products\library_generators.jl:54 [inlined]
[4] init()
@ boost_jll D:\Julia-1.9.1\juliaPKG\packages\boost_jll\L6aU9\src\wrappers\x86_64-w64-mingw32-cxx11.jl:34
[5] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1115
[6] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
@ Base .\loading.jl:1061
[7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
@ Base .\loading.jl:1506
[8] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1783
[9] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[10] macro expansion
@ .\loading.jl:1648 [inlined]
[11] macro expansion
@ .\lock.jl:267 [inlined]
[12] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:457
[14] top-level scope
@ D:\Julia-1.9.1\juliaPKG\packages\JLLWrappers\QpMQW\src\toplevel_generators.jl:188
[15] include
@ .\Base.jl:457 [inlined]
[16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_d
eps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base .\loading.jl:2045
[17] top-level scope
@ stdin:3
during initialization of module boost_jll in expression starting at D:\Julia-1.9.1\juliaPKG\packages\Arrow_jll\s7Yjm\src\wrappers\x86_64-w64-mingw32-cxx11.jl:4
in expression starting at D:\Julia-1.9.1\juliaPKG\packages\Arrow_jll\s7Yjm\src\Arrow_jll.jl:2
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile Arrow_jll [8ce61222-c28f-5041-a97a-c2198fb817bf] to "D:\Julia-1.9.1\juliaPKG\compiled\v1.9\Arrow_jll\jl_F4DC.tmp".
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:2296
[3] compilecache
@ .\loading.jl:2163 [inlined]
[4] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1805
[5] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[6] macro expansion
@ .\loading.jl:1648 [inlined]
[7] macro expansion
@ .\lock.jl:267 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[9] include(mod::Module, _path::String)
@ Base .\Base.jl:457
[10] top-level scope
@ D:\Julia-1.9.1\juliaPKG\packages\JLLWrappers\QpMQW\src\toplevel_generators.jl:188
[11] include
@ .\Base.jl:457 [inlined]
[12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_d
eps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base .\loading.jl:2045
[13] top-level scope
@ stdin:3
in expression starting at D:\Julia-1.9.1\juliaPKG\packages\GDAL_jll\mKGP0\src\wrappers\x86_64-w64-mingw32-cxx11.jl:17
in expression starting at D:\Julia-1.9.1\juliaPKG\packages\GDAL_jll\mKGP0\src\GDAL_jll.jl:2
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile GDAL_jll [a7073274-a066-55f0-b90d-d619367d196c] to "D:\Julia-1.9.1\juliaPKG\compiled\v1.9\GDAL_jll\jl_EC82.tmp".
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:2296
[3] compilecache
@ .\loading.jl:2163 [inlined]
[4] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1805
[5] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[6] macro expansion
@ .\loading.jl:1648 [inlined]
[7] macro expansion
@ .\lock.jl:267 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[9] include
@ .\Base.jl:457 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_d
eps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base .\loading.jl:2045
[11] top-level scope
@ stdin:3
in expression starting at D:\Julia-1.9.1\juliaPKG\packages\GDAL\A0qjS\src\GDAL.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile GDAL [add2ef01-049f-52c4-9ee2-e494f65e021a] to "D:\Julia-1.9.1\juliaPKG\compiled\v1.9\GDAL\jl_EA60.tmp".
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:2296
[3] compilecache
@ .\loading.jl:2163 [inlined]
[4] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1805
[5] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[6] macro expansion
@ .\loading.jl:1648 [inlined]
[7] macro expansion
@ .\lock.jl:267 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[9] include
@ .\Base.jl:457 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_d
eps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base .\loading.jl:2045
[11] top-level scope
@ stdin:3
in expression starting at D:\Julia-1.9.1\juliaPKG\packages\ArchGDAL\R3wJR\src\ArchGDAL.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile ArchGDAL [c9ce4bd3-c3d5-55b8-8973-c0e20141b8c3] to "D:\Julia-1.9.1\juliaPKG\compiled\v1.9\ArchGDAL\jl_E8EA.tmp".
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:2296
[3] compilecache
@ .\loading.jl:2163 [inlined]
[4] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1805
[5] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[6] macro expansion
@ .\loading.jl:1648 [inlined]
[7] macro expansion
@ .\lock.jl:267 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[9] include
@ .\Base.jl:457 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_d
eps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base .\loading.jl:2045
[11] top-level scope
@ stdin:3
in expression starting at C:\Users\gr\MagNav.jl-master\src\MagNav.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile MagNav [f91b31a4-be4d-40e3-b767-4b8c09c10076] to "D:\Julia-1.9.1\juliaPKG\compiled\v1.9\MagNav\jl_BD77.tmp".
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:2296
[3] compilecache
@ .\loading.jl:2163 [inlined]
[4] _require(pkg::Base.PkgId, env::String)
@ Base .\loading.jl:1805
[5] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base .\loading.jl:1660
[6] macro expansion
@ .\loading.jl:1648 [inlined]
[7] macro expansion
@ .\lock.jl:267 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1611
[9] include(fname::String)
@ Base.MainInclude .\client.jl:478
[10] top-level scope
@ C:\Users\gr\MagNav.jl-master\runs\example_sgl.jl:3
[11] include(fname::String)
@ Base.MainInclude .\client.jl:478
[12] top-level scope
@ REPL[3]:1
in expression starting at C:\Users\gr\MagNav.jl-master\runs\common_setup.jl:4
in expression starting at C:\Users\gr\MagNav.jl-master\runs\example_sgl.jl:3

I am new to the julia and can you tell me which jl files I need to run to get the program running, is common_setup.jl or something else?

Hello, may I ask if it is possible to use only one three-axis fluxgate sensor for TL model aeromagnetic compensation?

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I notice that there are many maps mentioned in the df_map.csv, but I can't find them. I was wonder if you could give more instruction about how to create map from SGL data?

Issue

When I run julia example_sgl.jl I get the following error:

signal (11): Segmentation fault
in expression starting at /home/seppe/MagNav.jl/runs/common_setup.jl:18
== at ./promotion.jl:477 [inlined]
isempty at ./dict.jl:709 [inlined]
isempty at ./abstractdict.jl:59 [inlined]
metadatakeys at /home/seppe/.julia/packages/DataFrames/dgZn3/src/other/metadata.jl:155 [inlined]
_drop_table_nonnote_metadata! at /home/seppe/.julia/packages/DataFrames/dgZn3/src/other/metadata.jl:753
_drop_all_nonnote_metadata! at /home/seppe/.julia/packages/DataFrames/dgZn3/src/other/metadata.jl:763
insert_single_column! at /home/seppe/.julia/packages/DataFrames/dgZn3/src/dataframe/dataframe.jl:653
setindex! at /home/seppe/.julia/packages/DataFrames/dgZn3/src/dataframe/dataframe.jl:669
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
jl_apply at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/julia.h:1839 [inlined]
do_call at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:126
eval_value at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:215
eval_stmt_value at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:166 [inlined]
eval_body at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:612
jl_interpret_toplevel_thunk at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:750
jl_toplevel_eval_flex at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:906
jl_toplevel_eval_flex at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:850
ijl_toplevel_eval_in at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:965
eval at ./boot.jl:368 [inlined]
include_string at ./loading.jl:1428
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
_include at ./loading.jl:1488
include at ./client.jl:476
unknown function (ip: 0x7fadb5216242)
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
jl_apply at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/julia.h:1839 [inlined]
do_call at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:126
eval_value at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:215
eval_stmt_value at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:166 [inlined]
eval_body at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:612
jl_interpret_toplevel_thunk at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/interpreter.c:750
jl_toplevel_eval_flex at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:906
jl_toplevel_eval_flex at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:850
jl_toplevel_eval_flex at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:850
ijl_toplevel_eval_in at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/toplevel.c:965
eval at ./boot.jl:368 [inlined]
include_string at ./loading.jl:1428
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
_include at ./loading.jl:1488
include at ./Base.jl:419
jfptr_include_57158.clone_1 at /home/seppe/.julia/juliaup/julia-1.8.3+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
exec_options at ./client.jl:303
_start at ./client.jl:522
jfptr__start_27977.clone_1 at /home/seppe/.julia/juliaup/julia-1.8.3+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2365 [inlined]
ijl_apply_generic at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/gf.c:2547
jl_apply at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/julia.h:1839 [inlined]
true_main at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/jlapi.c:575
jl_repl_entrypoint at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/src/jlapi.c:719
main at /cache/build/default-amdci5-6/julialang/julia-release-1-dot-8/cli/loader_exe.c:59
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x401098)
Allocations: 116978209 (Pool: 116955872; Big: 22337); GC: 39

System info

Ubuntu 20.04.5 LTS
Julia 1.8.3+0.x64.linux.gnu

also tried with Julia versions:
          1.6        1.6.7+0.x64.linux.gnu                
          1.6.7~x86  1.6.7+0.x86.linux.gnu                
          1.8        1.8.3+0.x64.linux.gnu                
          1.8.2      1.8.2+0.x64.linux.gnu                
          1.8.3~x86  1.8.3+0.x86.linux.gnu                
          1.9        1.9.0-alpha1+0.x64.linux.gnu

I'm getting the same error when I run it with the provided Docker.

Any ideas on what might be causing this issue?

Thanks for the help!