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Name: Matthew Zatzman
Type: User
Name: Matthew Zatzman
Type: User
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
ASCAT copy number R package
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
Send R code/R scripts/shell commands to LSF cluster without leaving R
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
Tutorials and code for CRI bioinformatics workshop.
Official repository for GDC User Guides in Markdown format
Genome data visualizations
Command line tool for merging single cell rna-sequencing bams with intelligent tag preservation
Repo to patch gene names from Tirosh Meta-Programs Paper
R package implementation of Milo for testing for differential abundance in KNN graphs
A Perl package containing an interface to the GATK suite of tools.
Haplotype-aware CNV analysis in scRNA-Seq
Single cell typing based on cell ontology
Parse samtools pileup file to get how many bases and what kind of bases are called
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
docker for numbat
SK HPF implementation of the phylowgs clonal evolution pipleine
Tools for processing scATAC data
A tool for detecting somatic variants in single cell data
R toolkit for single cell genomics
Single Cell Analysis Automated Workflow
slurmR: A Lightweight Wrapper for Slurm
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.