mobinasri / secphase Goto Github PK
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License: MIT License
Phasing reads with secondary alignments
License: MIT License
Hi,
I am running v0.4.3 as a Singularity container. secphase_index
can process the BAM file (1 cell of hifi reads), but when I start secphase
like this:
./secphase_v0.4.3.sif secphase -i sample.nsort.bam -f sample.fasta --hifi
it immediately segfaults (the index is present in the same folder named like sample.bam.secphase.index
). In principle, I could share the BAM file for debugging if required, but only via Globus.
Best,
Peter
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