mohebifar / openbabel-node Goto Github PK
View Code? Open in Web Editor NEWOpenBabel Bindings for Node.js
OpenBabel Bindings for Node.js
Using the npm inside node js tools for visual studio installing outputs :
Registry url: https://registry.npmjs.org/
Current Time: 30.8.2015 г. 1:58:52
Last Refreshed: 10.6.2015 г. 1:39:37
Number of Results: 164766
====Executing command 'npm install openbabel --save '====
npm WARN package.json [email protected] No repository field.
[email protected] install c:\users\hristo\documents\visual studio 2015\Projects\NodejsConsoleApp2\NodejsConsoleApp2\node_modules\openbabel
node-gyp rebuild
c:\users\hristo\documents\visual studio 2015\Projects\NodejsConsoleApp2\NodejsConsoleApp2\node_modules\openbabel>if not defined npm_config_node_gyp (node "C:\Program Files (x86)\nodejs\node_modules\npm\bin\node-gyp-bin....\node_modules\node-gyp\bin\node-gyp.js" rebuild ) else (rebuild)
Building the projects in this solution one at a time. To enable parallel build, please add the "/m" switch.
C:\Program Files (x86)\MSBuild\Microsoft.Cpp\v4.0\V140\Microsoft.Cpp.Platform.targets(55,5): error MSB8020: The build tools for Visual Studio 2010 (Platform Toolset = 'v100') cannot be found. To build using the v100 build tools, please install Visual Studio 2010 build tools. Alternatively, you may upgrade to the current Visual Studio tools by selecting the Project menu or right-click the solution, and then selecting "Retarget solution". [c:\users\hristo\documents\visual studio 2015\Projects\NodejsConsoleApp2\NodejsConsoleApp2\node_modules\openbabel\build\openbabel.vcxproj]
gyp ERR! build error
gyp ERR! stack Error:C:\Program Files (x86)\MSBuild\14.0\bin\msbuild.exe
failed with exit code: 1
gyp ERR! stack at ChildProcess.onExit (C:\Program Files (x86)\nodejs\node_modules\npm\node_modules\node-gyp\lib\build.js:269:23)
gyp ERR! stack at ChildProcess.emit (events.js:110:17)
gyp ERR! stack at Process.ChildProcess._handle.onexit (child_process.js:1074:12)
gyp ERR! System Windows_NT 6.3.9600
gyp ERR! command "node" "C:\Program Files (x86)\nodejs\node_modules\npm\node_modules\node-gyp\bin\node-gyp.js" "rebuild"
gyp ERR! cwd c:\users\hristo\documents\visual studio 2015\Projects\NodejsConsoleApp2\NodejsConsoleApp2\node_modules\openbabel
gyp ERR! node -v v0.12.2
gyp ERR! node-gyp -v v1.0.3
gyp ERR! not ok
npm ERR! Windows_NT 6.3.9600
npm ERR! argv "C:\Program Files (x86)\nodejs\node.exe" "C:\Program Files (x86)\nodejs\node_modules\npm\bin\npm-cli.js" "install" "openbabel" "--save"
npm ERR! node v0.12.2
npm ERR! npm v2.7.4
npm ERR! code ELIFECYCLE
npm ERR! [email protected] install:node-gyp rebuild
npm ERR! Exit status 1
npm ERR!
npm ERR! Failed at the [email protected] install script 'node-gyp rebuild'.
npm ERR! This is most likely a problem with the openbabel package,
npm ERR! not with npm itself.
npm ERR! Tell the author that this fails on your system:
npm ERR! node-gyp rebuild
npm ERR! You can get their info via:
npm ERR! npm owner ls openbabel
npm ERR! There is likely additional logging output above.
npm ERR! Please include the following file with any support request:
npm ERR! c:\users\hristo\documents\visual studio 2015\Projects\NodejsConsoleApp2\NodejsConsoleApp2\npm-debug.log
====npm command completed with exit code 1====
if not defined npm_config_node_gyp (node "C:\Program Files\nodejs\node_modules\npm\node_modules\npm-lifecycle\node-gyp-bin\....\node_modules\node-gyp\bin\node-gyp.js" rebuild ) else (node "C:\Program Files\nodejs\node_modules\npm\node_modules\node-gyp\bin\node-gyp.js" rebuild )
gyp ERR! configure error
gyp ERR! stack Error: Command failed: C:\Users\gopin\AppData\Local\Programs\Python\Python37\python.EXE -c import sys; print "%s.%s.%s" % sys.version_info[:3];
gyp ERR! stack File "", line 1
gyp ERR! stack import sys; print "%s.%s.%s" % sys.version_info[:3];
gyp ERR! stack ^
gyp ERR! stack SyntaxError: invalid syntax
gyp ERR! stack
gyp ERR! stack at ChildProcess.exithandler (child_process.js:294:12)
gyp ERR! stack at ChildProcess.emit (events.js:182:13)
gyp ERR! stack at maybeClose (internal/child_process.js:962:16)
gyp ERR! stack at Process.ChildProcess._handle.onexit (internal/child_process.js:251:5)
gyp ERR! System Windows_NT 10.0.17134
gyp ERR! command "C:\Program Files\nodejs\node.exe" "C:\Program Files\nodejs\node_modules\npm\node_modules\node-gyp\bin\node-gyp.js" "rebuild"
gyp ERR! cwd C:\Users\gopin\Desktop\New3202019\New\node_modules\openbabel
gyp ERR! node -v v10.15.0
gyp ERR! node-gyp -v v3.8.0
gyp ERR! not ok
npm ERR! code ELIFECYCLE
npm ERR! errno 1
npm ERR! [email protected] install: node-gyp rebuild
npm ERR! Exit status 1
npm ERR!
npm ERR! Failed at the [email protected] install script.
npm ERR! This is probably not a problem with npm. There is likely additional logging output above.
npm ERR! A complete log of this run can be found in:
$ npm install openbabel -g
/
[email protected] install /home/register/sf_install/node/lib/node_modules/openbabel
node-gyp rebuild
child_process: customFds option is deprecated, use stdio instead.
make: Entering directory /home/register/sf_install/node/lib/node_modules/openbabel/build' CXX(target) Release/obj.target/openbabel/src/atom.o In file included from ../src/atom.cpp:1:0: /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h: In static member function ‘static void v8::NonCopyablePersistentTraits<T>::Uncompilable() [with O = v8::Object, T = v8::Object]’: /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:592:5: instantiated from ‘static void v8::NonCopyablePersistentTraits<T>::Copy(const v8::Persistent<S, M>&, v8::NonCopyablePersistentTraits<T>::NonCopyablePersistent*) [with S = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>, T = v8::Object, v8::NonCopyablePersistentTraits<T>::NonCopyablePersistent = v8::Persistent<v8::Object>]’ /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:5826:3: instantiated from ‘void v8::Persistent<T, M>::Copy(const v8::Persistent<S, M>&) [with S = v8::Object, M2 = v8::NonCopyablePersistentTraits<v8::Object>, T = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>]’ /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:657:5: instantiated from ‘v8::Persistent<T, M>::Persistent(const v8::Persistent<T, M>&) [with T = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>, v8::Persistent<T, M> = v8::Persistent<v8::Object>]’ ../src/atom.cpp:90:46: instantiated from here /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:596:5: error: cannot convert ‘v8::Primitive*’ to ‘v8::Object* volatile’ in assignment make: *** [Release/obj.target/openbabel/src/atom.o] Error 1 make: Leaving directory
/home/register/sf_install/node/lib/node_modules/openbabel/build'
gyp ERR! build error
gyp ERR! stack Error: make
failed with exit code: 2
gyp ERR! stack at ChildProcess.onExit (/home/register/sf_install/node/lib/node_modules/npm/node_modules/node-gyp/lib/build.js:267:23)
gyp ERR! stack at ChildProcess.emit (events.js:110:17)
gyp ERR! stack at Process.ChildProcess._handle.onexit (child_process.js:1067:12)
gyp ERR! System Linux 3.5.0-23-generic
gyp ERR! command "node" "/home/register/sf_install/node/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js" "rebuild"
gyp ERR! cwd /home/register/sf_install/node/lib/node_modules/openbabel
gyp ERR! node -v v0.12.0
gyp ERR! node-gyp -v v1.0.2
gyp ERR! not ok
npm ERR! Linux 3.5.0-23-generic
npm ERR! argv "/home/register/sf_install/node/bin/node" "/home/register/sf_install/node/bin/npm" "install" "openbabel" "-g"
npm ERR! node v0.12.0
npm ERR! npm v2.5.1
npm ERR! code ELIFECYCLE
npm ERR! [email protected] install: node-gyp rebuild
npm ERR! Exit status 1
npm ERR!
npm ERR! Failed at the [email protected] install script 'node-gyp rebuild'.
npm ERR! This is most likely a problem with the openbabel package,
npm ERR! not with npm itself.
npm ERR! Tell the author that this fails on your system:
npm ERR! node-gyp rebuild
npm ERR! You can get their info via:
npm ERR! npm owner ls openbabel
npm ERR! There is likely additional logging output above.
npm ERR! Please include the following file with any support request:
npm ERR! /home/register/sf_install/node/lib/node_modules/npm/npm-debug.log
How can i fix my mistakes?
Very interested in trying this library on Windows via npm install.
Hi there! I'm extremely interested in using this package (it's the lightest-weight and best looking package out there) but can't install it on a current-ish version of node (e.g. node v15).
npm install openbabel
fails due to node-gyp
rebuild failing, due to what looks like an outdated version of the nan
package built for older versions of node? Not 100% sure as I don't work with C++ builds/compiling to a node package. But I'm guessing you'll have greater insight.
> [email protected] install /Users/xxx/xxx-app/node_modules/openbabel
> node-gyp rebuild
CXX(target) Release/obj.target/openbabel/src/atom.o
In file included from ../src/atom.cpp:2:
In file included from ../src/mol.h:11:
In file included from ../node_modules/nan/nan.h:111:
../node_modules/nan/nan_new.h:24:43: error: no member named 'Handle' in namespace 'v8'
template <typename T> v8::Local<T> To(v8::Handle<v8::Integer> i);
~~~~^
../node_modules/nan/nan_new.h:24:61: error: expected '(' for function-style cast or type construction
template <typename T> v8::Local<T> To(v8::Handle<v8::Integer> i);
~~~~~~~~~~~^
../node_modules/nan/nan_new.h:24:63: error: use of undeclared identifier 'i'
template <typename T> v8::Local<T> To(v8::Handle<v8::Integer> i);
. . .
. . .
etc.
etc.
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [Release/obj.target/openbabel/src/atom.o] Error 1
gyp ERR! build error
gyp ERR! stack Error: `make` failed with exit code: 2
gyp ERR! stack at ChildProcess.onExit (/Users/xxx/.nvm/versions/node/v15.9.0/lib/node_modules/npm/node_modules/node-gyp/lib/build.js:194:23)
gyp ERR! stack at ChildProcess.emit (node:events:378:20)
gyp ERR! stack at Process.ChildProcess._handle.onexit (node:internal/child_process:290:12)
gyp ERR! System Darwin 20.6.0
gyp ERR! command "/Users/xxx/.nvm/versions/node/v15.9.0/bin/node" "/Users/adam/.nvm/versions/node/v15.9.0/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js" "rebuild"
gyp ERR! cwd /Users/xxx/xxx-app/node_modules/openbabel
gyp ERR! node -v v15.9.0
gyp ERR! node-gyp -v v5.1.0
gyp ERR! not ok
The function Atom.prototype.isConnectedWith()
returns wrong value.
mol.atoms[0].isConnectedWith(atoms[3], 2); // returns true
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