Related Issues (20)
- Get rid of /work directory and symbolic home links
- Removed commented code
- Output version numbers of apps and GIAB
- Remove bedtools from exec depends (no longer required)
- Specify version numbers in exec depends
- Remove java from exec depends (no longer required)
- Replace special characters in filenames HOT 1
- No need to have separate truth_vcf/query_vcf variables, just reassign the ..._vcf_path environment variable
- Limit number or characters in sample name for ROC curve
- clarify contents of output folder in readme
- test2 HOT 2
- is the asset bundle version controlled anywhere?
- Bug when assessing identical files HOT 1
- Maybe change this to output as .zip file so it's more user friendly for Windows users
- Output ga4gh html report
- ROC plot scripts don't work if there are 0 indels. Replace the ga4gh html reports.
- Make build 38 compatible HOT 1
- Turn off the pass only option so that filtered variants are included in result set
- update instance type
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